Fixed error introduced by changes in survival:
data(ovarian, package = "survival") was replaced with data(cancer, package = "survival").
Fixed vignette (load knitr correctly).
Added rmarkdown to Suggests:.
Fixed handling of trailing zeros in prettify
(fixes #40).
Updated maintainer's email address.
Fix scoping in summarize function
(fixes #33).
Removed confint.lme to make CRAN happy
(fixes #34).
Fixed bug in label assignment with numerical which.
print.xtable.summary now also centers tables per
default if floating = FALSE.
Added support for Cox frailty models in prettify
Fixed problem with include.rownames by ignoring the option
(fixes #30).
Use $-$ per default for negative numeric values
(fixes #32).
Make tests compatible with new testthat version (> 0.11.0).
Fixed messages of old summary functions.
summarize produces summary tables that can be further
processed with xtable or kable to produce LaTeX or
Markdown tables, respectively (closes
#2 and
#3).
latex.table.cont and latex.table.fac are now
deprecated. Use summarize instead.
labels() are now stored as attribute of the variable
instead of as attribute of the data set (closes
#1).
Completely refactored code base.
Added two vignettes (closes #7).
The package is now extensively tested using testthat
(closes #12).
Adhere to CRAN policies regarding import of base packages (closes #8).
Fixed ‘man/toLatex.Rd’:
Changed \donttest to \dontrun
‘DESCRIPTION’ now uses single quotes for package and software names.
Fixed ‘inst/CITATION’: Now it is possible to extract citation without the need to install the package.
latex.table.fac:
Allow more than two groups.
Added p-values.
Added option to display fractions or percentages
(percent = TRUE). The latter is the default.
Changed default to digits = 3.
Generally improved display of grouped statistics.
Added ‘inst/CITATION’ file.
Added ‘inst/COPYRIGHTS’ file.
Added ‘inst/CONTRIBUTIONS’ file.
Updated ‘DESCRIPTION’ to reflect CRAN policies.
Changed URL in ‘DESCRIPTION’ to https://github.com/hofnerb/papeR.
Do not replace registered S3 methods from base/recommended packages (#5).
Fixed handling of levels().
Fixed bug with factor levels.
latex.table.fac and latex.table.cont:
fixed handling of missing values in group.
Exported plot.labeled.data.frame (and some other
functions for labeled data.frames)
Greatly improved plot function for labeled
data.frames
Changed plain text ‘NEWS’ to ‘inst/NEWS.Rd’
The package now enhances nlme, lme4 and survival. Thus, we no longer import lme4 and survival.
Fixed bug in toLatex.sessionInfo(, citations = FALSE)
(spotted by Brian S. Diggs <brian.s.diggs __at__ gmail.com>)
Changed plot(data, ...) to plot(x, ...) to
make the generic function happy.
included (experimental) version of
prettify.summary.merMod to make lme4 (>= 1.0.0) happy
included better handling of environments in prettify
functions and checks if the data has changed
included possibility to specify confidence intervals directly
via confint, e.g.
prettify(summary(mod), confint = confint(mod))
better handling of NAMESPACES and Imports
added (first) software tests
first release to CRAN
improvement/bugfix in rbind.labeled.data.frame()
improvement of toLatex.sessionInfo():
file can be NULL now (no BibTeX file created on HDD)
added plot function for labeled.data.frame objects that
allows for univariate plots and grouped, bivariate plots
numerous improvements in manuals
greatly improved prettify functions:
added prettify functions for summary.coxph,
summary.lme, summary.mer and anova
added confidence intervals to all model based
prettify functions and made confint = TRUE the
default; confidence intervalls are computed by refitting the
model within prettify and using confint() on this
model (experimental)
improved handling of p-values
added new class "labeled.data.frame" with special
subset, cbind and rbind functions (to keep
labels when changing data set)
added "shortcut" to define labels using labels =
TRUE in latex.tables.XXX:
labels are extracted from labeled.data.frame directly
new toLatex function for sessionInfo()
[with nicer results than the default function from base R:
e.g. citations are included]
initial version
improvement of prettify function
added prettify functions for more object classes
added function toLatex to sanitize code for usage in LaTeX
improved label handling when data set is alterd (e.g. variables dropped, added or renamed)